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You may customize the charts in the parent Reaction Traffic node with the many options available in this node. You may view just the reaction network, or choose to add the traffic amounts in each pathway of the network. Traffic charts are done by displaying the width of the arrows in proportion to the relative transit of selected variable along the reaction network. You may highlight or isolate pathways for certain compounds of interest. You may also configure colors, shapes, the ranking order of appearance, and create subgraphs. Each of these options is explained in detail below.
Tabbed ViewsTabbed Views General Compounds Reactions
General
Top of Topic This view provides the main set of configuration options for the graph. It has three grids, which are explained below:
Grid Views
Graph OptionsPathways SubGraphs
Graph Options The options available are described below:
Pathways In this grid, you may select the compounds whose pathways are to be highlighted. By default, no compound is selected, thus the reaction network does not highlight the pathway of any compound in particular. The Pathway Display Options available are:
SubGraphs Subgraphs can be used to select compound and/or reaction nodes that will be grouped together. This allows you to draw the graph with certain nodes in close proximity to each other. After defining the subgraphs, you may assign compounds and reactions to them by the Subgraph column available in the Compounds and Reactions tabs respectively. The properties for the subgraphs are detailed below:
Compounds
Top of Topic Here, you may set some options for displaying the compound nodes in the reaction network.
Reactions
Top of Topic This view has almost the same options as in the Compounds tab, except that they are applied to the reaction nodes. One difference is that when choosing a color for a given reaction, the color is applied for all the arrows that come or leave the selected reaction node. To enable color selection for the reactions, you must disable the Highlight Pathway option. See Also:
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